JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBLN1_chr16_49272917_49286838	0/0	g0041	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0042	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0043	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0044	1	0	0	0	0	1	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0045	1	0	0	0	0	1	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0046	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0047	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0048	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0049	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0050	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0051	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0052	1	0	1	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0053	1	0	0	0	0	1	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0054	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0055	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0056	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0057	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0058	1	1	0	0	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0059	1	0	0	1	0	0	CBLN1	chr16	49272917	49286838
CBLN1_chr16_49272917_49286838	0/0	g0060	1	0	0	0	0	1	CBLN1	chr16	49272917	49286838
CBLN2_chr18_72531681_72549342	0/0	g0001	35	0	16	13	2	4	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0002	28	3	6	14	1	4	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0003	20	0	3	16	1	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0004	19	0	0	18	0	1	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0005	17	0	0	17	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0006	16	0	0	16	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0007	15	0	6	3	1	5	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0008	10	1	0	6	0	3	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0009	8	7	1	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0010	8	0	7	0	1	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0011	8	0	3	4	0	1	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	1/0	g0012	7	4	0	2	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0013	6	5	0	1	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0014	6	0	0	6	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0015	6	0	0	6	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0016	5	4	0	0	0	1	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0017	5	0	0	3	0	2	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0018	5	1	0	4	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0019	5	0	0	5	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0020	5	0	0	5	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0021	4	0	0	3	1	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0022	4	0	0	4	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0023	4	4	0	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0024	4	1	2	1	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0025	3	3	0	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0026	3	0	3	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0027	3	0	0	3	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0028	3	0	0	3	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0029	3	0	0	3	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0030	3	3	0	0	0	0	CBLN2	chr18	72531681	72549342