JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBLN2_chr18_72531681_72549342	0/0	g0131	1	1	0	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0132	1	0	1	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0133	1	1	0	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0134	1	0	0	1	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0135	1	0	0	0	1	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0136	1	0	1	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0137	1	1	0	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0138	1	0	0	1	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0139	1	0	0	1	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0140	1	0	1	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0141	1	0	1	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0142	1	0	0	1	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0143	1	0	0	1	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0144	1	0	0	0	0	1	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0145	1	0	1	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0146	1	0	1	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0147	1	0	0	0	1	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0148	1	0	0	0	0	1	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0149	1	0	0	1	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0150	1	0	1	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0151	1	1	0	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0152	1	0	1	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0153	1	1	0	0	0	0	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/0	g0154	1	0	0	0	0	1	CBLN2	chr18	72531681	72549342
CBLN2_chr18_72531681_72549342	0/1	g0155	1	0	0	0	0	0	CBLN2	chr18	72531681	72549342
CBLN3_chr14_24421545_24434668	0/0	g0001	228	5	46	139	10	28	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0002	57	19	4	30	1	3	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	1/0	g0003	28	12	1	4	1	9	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0004	24	2	5	12	3	2	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0005	22	10	8	2	0	2	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/1	g0006	16	5	6	0	2	2	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0007	8	8	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0008	7	0	0	7	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0009	6	0	0	6	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0010	6	6	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0011	6	6	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0012	3	0	0	3	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0013	3	1	2	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0014	3	0	0	3	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0015	2	2	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0016	2	0	0	2	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0017	2	0	0	2	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0018	2	0	0	2	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0019	2	0	1	0	0	1	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0020	2	2	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0021	2	2	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0022	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0023	1	0	0	0	0	1	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0024	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0025	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668