JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBLN3_chr14_24421545_24434668	0/0	g0026	1	0	0	1	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0027	1	0	0	1	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0028	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0029	1	0	0	1	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0030	1	0	0	0	1	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0031	1	0	0	1	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0032	1	0	1	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0033	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0034	1	0	1	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0035	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0036	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0037	1	0	0	1	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0038	1	0	0	1	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0039	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0040	1	0	1	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0041	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN3_chr14_24421545_24434668	0/0	g0042	1	1	0	0	0	0	CBLN3	chr14	24421545	24434668
CBLN4_chr20_55992357_56010519	1/0	g0001	126	1	29	71	8	16	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0002	76	3	5	57	2	9	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0003	18	1	10	0	4	3	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0004	14	12	2	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0005	14	14	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0006	14	0	2	11	0	1	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0007	14	13	1	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0008	11	2	1	3	0	5	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0009	9	0	3	6	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0010	9	0	0	9	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0011	8	8	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0012	6	0	0	6	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0013	6	0	5	0	1	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0014	5	0	0	5	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0015	4	4	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0016	4	4	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0017	4	0	0	4	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0018	4	4	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0019	3	3	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0020	3	0	0	3	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0021	3	0	0	3	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0022	3	3	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0023	2	2	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0024	2	2	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0025	2	2	0	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0026	2	0	0	2	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0027	2	0	2	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0028	2	0	0	2	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0029	2	0	0	2	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0030	2	0	0	2	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0031	2	1	1	0	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0032	2	0	0	2	0	0	CBLN4	chr20	55992357	56010519
CBLN4_chr20_55992357_56010519	0/0	g0033	2	1	1	0	0	0	CBLN4	chr20	55992357	56010519