JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBX2_chr17_79773148_79792983	0/0	g0152	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0153	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0154	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0155	1	0	0	0	0	1	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0156	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0157	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0158	1	0	1	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0159	1	0	1	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0160	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0161	1	0	0	0	0	1	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0162	1	0	1	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0163	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0164	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0165	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0166	1	0	1	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0167	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0168	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0169	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0170	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0171	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0172	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0173	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0174	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0175	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0176	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0177	1	0	1	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0178	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0179	1	0	1	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0180	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0181	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0182	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0183	1	0	0	1	0	0	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0184	1	0	0	0	0	1	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	g0185	1	1	0	0	0	0	CBX2	chr17	79773148	79792983
CBX3_chr7_26196745_26218607	1/0	g0001	31	5	5	15	1	4	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0002	31	6	7	10	0	8	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0003	23	5	8	9	1	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0004	20	0	6	13	0	1	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0005	17	0	5	8	0	4	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0006	13	4	5	3	1	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0007	12	1	0	10	0	1	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0008	9	1	0	8	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0009	8	7	1	0	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0010	6	0	0	5	0	1	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0011	5	0	0	5	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0012	5	1	0	4	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0013	4	0	0	4	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0014	4	0	0	4	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0015	4	0	0	4	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0016	4	0	1	2	0	1	CBX3	chr7	26196745	26218607