JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBX3_chr7_26196745_26218607	0/0	g0167	1	0	0	0	0	1	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0168	1	0	0	1	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0169	1	0	0	1	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0170	1	1	0	0	0	0	CBX3	chr7	26196745	26218607
CBX3_chr7_26196745_26218607	0/0	g0171	1	1	0	0	0	0	CBX3	chr7	26196745	26218607
CBX4_chr17_79828156_79844440	0/0	g0001	40	2	5	29	0	4	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0002	36	8	2	25	1	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	1/0	g0003	23	1	2	18	1	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0004	18	1	10	6	1	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0005	18	11	6	0	1	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0006	15	0	0	11	0	4	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0007	13	0	0	10	0	3	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0008	7	5	2	0	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0009	7	1	4	0	1	1	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0010	7	0	0	2	0	5	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0011	7	3	3	0	1	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0012	6	0	0	6	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/1	g0013	6	1	1	3	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0014	6	1	3	0	0	2	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0015	6	0	0	6	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0016	6	3	3	0	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0017	5	0	0	3	0	2	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0018	5	1	3	0	1	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0019	5	0	1	3	0	1	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0020	4	4	0	0	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0021	4	0	3	0	0	1	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0022	4	2	0	1	1	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0023	4	0	1	3	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0024	4	0	1	3	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0025	4	0	0	0	1	3	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0026	3	3	0	0	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0027	3	0	1	0	0	2	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0028	3	0	0	3	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0029	3	1	0	2	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0030	3	3	0	0	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0031	3	0	0	3	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0032	2	0	0	2	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0033	2	2	0	0	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0034	2	0	0	2	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0035	2	0	0	2	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0036	2	0	0	2	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0037	2	2	0	0	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0038	2	0	0	0	0	2	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0039	2	0	2	0	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0040	2	0	0	2	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0041	2	0	0	2	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0042	2	1	0	1	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0043	2	0	2	0	0	0	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0044	2	1	0	0	0	1	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	g0045	2	2	0	0	0	0	CBX4	chr17	79828156	79844440