JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBX6_chr22_38856422_38877216	0/0	g0158	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0159	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0160	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0161	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0162	1	0	0	1	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0163	1	0	0	1	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0164	1	0	0	0	0	1	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0165	1	0	0	0	0	1	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	1/0	g0166	1	0	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0167	1	0	0	1	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0168	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0169	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0170	1	0	1	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0171	1	0	0	1	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0172	1	0	0	1	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0173	1	0	0	0	1	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0174	1	0	0	0	1	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0175	1	0	0	0	0	1	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0176	1	0	0	0	0	1	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0177	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0178	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0179	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0180	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	g0181	1	1	0	0	0	0	CBX6	chr22	38856422	38877216
CBX7_chr22_39125772_39157680	0/0	g0001	28	0	6	19	0	3	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0002	24	1	6	12	1	4	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0003	18	0	5	9	1	3	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	1/0	g0004	18	0	6	6	2	3	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0005	14	4	2	2	2	4	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0006	7	6	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0007	5	5	0	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0008	5	5	0	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0009	5	3	2	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0010	5	0	0	5	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0011	4	0	0	3	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0012	4	4	0	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0013	4	0	0	4	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0014	4	0	0	4	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0015	4	4	0	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/1	g0016	3	0	0	2	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0017	3	1	1	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0018	3	0	0	0	0	3	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0019	3	0	0	2	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0020	3	0	0	3	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0021	3	3	0	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0022	3	0	0	3	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0023	3	0	0	3	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0024	2	1	1	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0025	2	0	0	1	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0026	2	0	0	2	0	0	CBX7	chr22	39125772	39157680