JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBX7_chr22_39125772_39157680	0/0	g0177	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0178	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0179	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0180	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0181	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0182	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0183	1	0	1	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0184	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0185	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0186	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0187	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0188	1	1	0	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0189	1	0	1	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0190	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0191	1	0	0	0	1	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0192	1	0	1	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0193	1	0	1	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0194	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0195	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0196	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0197	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0198	1	0	1	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0199	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0200	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0201	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0202	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0203	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0204	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0205	1	0	0	0	0	1	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0206	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0207	1	0	1	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0208	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0209	1	0	0	1	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0210	1	1	0	0	0	0	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	g0211	1	0	1	0	0	0	CBX7	chr22	39125772	39157680
CBX8_chr17_79787132_79802077	1/0	g0001	122	6	20	75	2	18	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/1	g0002	57	11	14	27	2	2	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0003	56	40	4	8	0	4	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0004	30	1	8	10	1	10	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0005	14	7	5	0	0	2	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0006	10	1	5	0	2	2	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0007	9	1	1	1	3	3	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0008	9	0	0	9	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0009	6	4	2	0	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0010	4	4	0	0	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0011	4	0	0	4	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0012	3	3	0	0	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0013	3	3	0	0	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0014	3	1	0	2	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0015	3	0	0	3	0	0	CBX8	chr17	79787132	79802077