JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBX8_chr17_79787132_79802077	0/0	g0066	1	1	0	0	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0067	1	1	0	0	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0068	1	0	0	0	0	1	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0069	1	1	0	0	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0070	1	0	0	1	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0071	1	0	0	1	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0072	1	1	0	0	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0073	1	1	0	0	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0074	1	0	0	1	0	0	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	g0075	1	0	0	0	0	1	CBX8	chr17	79787132	79802077
CBY1_chr22_38651638_38678850	0/0	g0001	72	8	16	32	6	10	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0002	19	1	2	15	0	1	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0003	12	1	1	5	4	1	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0004	8	0	1	7	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0005	8	7	1	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0006	7	0	0	7	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0007	5	1	0	4	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0008	5	2	0	2	0	1	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0009	5	5	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0010	4	0	0	4	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0011	4	4	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0012	4	0	0	4	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0013	4	0	1	1	0	2	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0014	4	4	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0015	4	0	0	4	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0016	3	3	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0017	3	0	0	0	0	3	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0018	3	2	0	0	0	1	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0019	3	3	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0020	3	0	0	3	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0021	3	0	0	3	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0022	3	0	1	2	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0023	3	0	3	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0024	3	1	0	0	0	2	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0025	3	0	1	2	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0026	3	0	0	3	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0027	3	0	0	0	2	1	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0028	3	3	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0029	3	0	0	3	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0030	3	0	0	3	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0031	3	0	0	3	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0032	2	2	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0033	2	0	0	0	1	1	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0034	2	0	0	2	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0035	2	0	0	2	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/1	g0036	2	0	1	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0037	2	0	0	2	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0038	2	0	2	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0039	2	0	2	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0040	2	2	0	0	0	0	CBY1	chr22	38651638	38678850