JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CBY1_chr22_38651638_38678850	0/0	g0141	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0142	1	0	1	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0143	1	0	0	0	0	1	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0144	1	0	1	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0145	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0146	1	0	1	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0147	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0148	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0149	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0150	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0151	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0152	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0153	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0154	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0155	1	0	1	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0156	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0157	1	0	1	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0158	1	0	0	0	0	1	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0159	1	0	1	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0160	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0161	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0162	1	0	1	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0163	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0164	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0165	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0166	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0167	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0168	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0169	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0170	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0171	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0172	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0173	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0174	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0175	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0176	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0177	1	1	0	0	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0178	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0179	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	g0180	1	0	0	1	0	0	CBY1	chr22	38651638	38678850
CBY2_chr13_45697320_45719559	1/1	g0001	62	0	16	33	4	7	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	g0002	60	4	5	43	1	7	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	g0003	48	2	11	19	7	9	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	g0004	27	0	0	26	0	1	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	g0005	15	13	2	0	0	0	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	g0006	15	6	4	0	0	5	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	g0007	15	0	1	14	0	0	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	g0008	15	2	7	0	0	6	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	g0009	11	7	4	0	0	0	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	g0010	9	9	0	0	0	0	CBY2	chr13	45697320	45719559