Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AAR2_chr20_36231478_36261933	0/0	g0181	1	1	0	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0182	1	1	0	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0183	1	1	0	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0184	1	1	0	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0185	1	1	0	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0186	1	0	1	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0187	1	0	1	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0188	1	0	1	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0189	1	0	1	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0190	1	1	0	0	0	0	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	g0191	1	1	0	0	0	0	AAR2	chr20	36231478	36261933
AARD_chr8_116933207_116949487	1/1	g0001	153	11	34	75	8	23	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0002	69	0	20	27	4	18	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0003	60	21	4	34	0	1	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0004	33	0	8	25	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0005	22	12	2	3	2	3	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0006	20	0	0	20	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0007	11	11	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0008	8	0	0	8	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0009	7	7	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0010	5	0	0	5	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0011	5	5	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0012	5	0	1	4	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0013	4	4	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0014	4	4	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0015	3	3	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0016	3	3	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0017	2	0	2	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0018	2	0	0	0	0	2	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0019	2	0	0	2	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0020	2	1	1	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0021	2	0	0	1	0	1	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0022	2	2	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0023	1	1	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0024	1	0	1	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0025	1	0	0	1	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0026	1	0	1	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0027	1	1	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0028	1	0	0	1	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0029	1	0	1	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0030	1	0	0	1	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0031	1	1	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0032	1	0	1	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0033	1	1	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0034	1	1	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0035	1	1	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0036	1	0	0	1	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0037	1	1	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0038	1	1	0	0	0	0	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	g0039	1	1	0	0	0	0	AARD	chr8	116933207	116949487