JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CC2D1A_chr19_13901201_13935879	0/0	g0275	1	0	0	0	0	1	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0276	1	0	0	1	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0277	1	0	0	0	0	1	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0278	1	0	0	1	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0279	1	0	0	1	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0280	1	0	0	1	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0281	1	0	1	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0282	1	0	0	0	0	1	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0283	1	0	0	1	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0284	1	0	1	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0285	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0286	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0287	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0288	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0289	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0290	1	0	1	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0291	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0292	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0293	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0294	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0295	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0296	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0297	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0298	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0299	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	g0300	1	1	0	0	0	0	CC2D1A	chr19	13901201	13935879
CC2D1B_chr1_52345597_52371205	0/1	g0001	70	6	16	38	3	6	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0002	17	0	3	14	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0003	17	3	8	0	2	4	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0004	10	10	0	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0005	9	4	0	2	1	2	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0006	7	7	0	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0007	7	7	0	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0008	6	0	2	2	0	2	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0009	5	5	0	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0010	4	0	4	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0011	4	0	2	0	1	1	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0012	4	0	1	2	0	1	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0013	4	0	0	3	0	1	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0014	3	3	0	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0015	3	0	0	3	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0016	3	0	0	3	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0017	3	3	0	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0018	3	0	1	2	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0019	3	2	1	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0020	3	0	0	3	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0021	3	0	3	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0022	2	2	0	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0023	2	2	0	0	0	0	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	g0024	2	2	0	0	0	0	CC2D1B	chr1	52345597	52371205