JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCAR1_chr10_68716239_68797377	0/0	g0340	1	0	0	0	0	1	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0341	1	1	0	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0342	1	0	0	1	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0343	1	0	0	1	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0344	1	1	0	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0345	1	0	1	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0346	1	0	1	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0347	1	0	1	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0348	1	1	0	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0349	1	0	1	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0350	1	1	0	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0351	1	1	0	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0352	1	0	1	0	0	0	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	g0353	1	1	0	0	0	0	CCAR1	chr10	68716239	68797377
CCAR2_chr8_22599757_22625471	0/0	g0001	37	6	12	10	3	6	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0002	19	4	8	7	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/1	g0003	17	2	3	2	5	4	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0004	12	1	3	4	0	4	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0005	12	0	3	7	0	2	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0006	6	2	0	4	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0007	6	2	4	0	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0008	5	0	1	4	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0009	4	0	0	4	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0010	4	0	0	4	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0011	4	0	0	4	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0012	4	1	0	3	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0013	3	0	0	3	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0014	3	0	0	3	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0015	3	3	0	0	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0016	3	0	0	3	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0017	3	0	3	0	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0018	3	0	2	1	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0019	2	2	0	0	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0020	2	0	0	0	0	2	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0021	2	0	0	2	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0022	2	0	0	2	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0023	2	0	1	0	0	1	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0024	2	1	0	1	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0025	2	1	1	0	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0026	2	0	0	2	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0027	2	0	0	2	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0028	2	2	0	0	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0029	2	2	0	0	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0030	2	0	0	0	2	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0031	2	0	0	2	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0032	2	1	0	0	0	1	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0033	2	0	0	2	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0034	2	0	0	0	1	1	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0035	2	1	0	1	0	0	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	g0036	2	0	0	2	0	0	CCAR2	chr8	22599757	22625471