JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACSS3_chr12_81073079_81266210	0/0	g0288	1	1	0	0	0	0	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	g0289	1	1	0	0	0	0	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	g0290	1	1	0	0	0	0	ACSS3	chr12	81073079	81266210
ACTA1_chr1_229426245_229439094	0/0	g0001	153	7	28	105	4	9	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0002	141	28	17	58	11	27	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/1	g0003	40	0	17	17	2	3	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0004	17	0	0	17	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0005	17	2	14	0	0	1	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0006	15	11	2	1	1	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0007	15	14	1	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0008	10	10	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0009	7	7	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0010	6	6	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0011	3	2	1	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0012	3	0	0	2	0	1	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0013	2	0	2	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0014	2	0	0	2	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0015	2	0	0	2	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0016	2	1	0	1	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0017	2	2	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0018	1	0	0	1	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	1/0	g0019	1	0	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0020	1	1	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0021	1	0	1	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0022	1	1	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0023	1	1	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0024	1	0	1	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0025	1	1	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0026	1	1	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0027	1	0	0	0	0	1	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0028	1	0	1	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0029	1	1	0	0	0	0	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	g0030	1	0	1	0	0	0	ACTA1	chr1	229426245	229439094
ACTA2_chr10_88930074_88957773	0/0	g0001	74	0	14	52	1	7	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0002	56	0	9	40	0	7	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/1	g0003	46	17	10	11	3	4	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0004	18	16	2	0	0	0	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	1/0	g0005	14	0	3	3	4	3	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0006	12	1	5	5	1	0	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0007	9	0	0	8	0	1	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0008	8	7	1	0	0	0	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0009	7	0	0	6	0	1	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0010	6	0	2	0	2	2	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0011	6	0	3	0	1	2	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0012	5	5	0	0	0	0	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0013	4	0	0	4	0	0	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0014	4	0	0	4	0	0	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0015	4	0	1	0	0	3	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0016	4	4	0	0	0	0	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	g0017	4	0	0	4	0	0	ACTA2	chr10	88930074	88957773