JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCBE1_chr18_59425939_59702423	0/0	g0216	1	0	0	0	1	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0217	1	0	1	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0218	1	1	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0219	1	0	1	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0220	1	0	0	1	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0221	1	0	0	1	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0222	1	0	0	0	0	1	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0223	1	0	1	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0224	1	0	0	0	0	1	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0225	1	0	0	0	1	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0226	1	0	0	0	0	1	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0227	1	0	1	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0228	1	0	0	1	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0229	1	1	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0230	1	1	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0231	1	1	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0232	1	0	0	0	0	1	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0233	1	0	0	1	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0234	1	0	0	1	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0235	1	1	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0236	1	1	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0237	1	1	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0238	1	1	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0239	1	1	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/1	g0240	1	0	0	0	0	0	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0241	1	0	0	0	0	1	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	g0242	1	0	1	0	0	0	CCBE1	chr18	59425939	59702423
CCDC102A_chr16_57507181_57541571	0/0	g0001	12	0	0	10	0	2	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0002	8	0	6	1	1	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0003	6	0	0	6	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0004	6	0	0	4	1	1	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0005	6	6	0	0	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0006	5	0	4	1	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0007	4	1	2	1	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0008	4	0	0	4	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0009	3	0	0	2	0	1	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0010	3	0	0	3	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0011	3	0	0	3	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0012	3	0	0	3	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0013	3	0	0	1	0	2	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0014	3	0	2	1	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0015	3	0	3	0	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0016	3	0	1	1	0	1	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0017	3	0	0	0	0	3	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0018	3	3	0	0	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0019	2	2	0	0	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0020	2	2	0	0	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0021	2	2	0	0	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0022	2	2	0	0	0	0	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	g0023	2	0	2	0	0	0	CCDC102A	chr16	57507181	57541571