JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC105_chr19_15005726_15028276	0/0	g0315	1	0	0	0	0	1	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0316	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0317	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0318	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0319	1	0	0	0	0	1	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0320	1	0	0	0	1	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0321	1	0	0	1	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0322	1	0	1	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0323	1	0	1	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0324	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0325	1	0	1	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0326	1	0	1	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0327	1	0	1	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0328	1	0	0	1	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0329	1	0	0	1	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0330	1	0	1	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0331	1	0	1	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0332	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0333	1	0	0	0	1	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0334	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0335	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0336	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0337	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0338	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0339	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0340	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0341	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0342	1	0	1	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0343	1	0	0	1	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0344	1	0	0	1	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0345	1	0	0	1	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0346	1	0	1	0	0	0	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0347	1	0	0	0	0	1	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	g0348	1	1	0	0	0	0	CCDC105	chr19	15005726	15028276
CCDC106_chr19_55643212_55658161	0/0	g0001	167	26	40	71	10	20	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0002	78	17	14	33	2	12	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0003	73	18	7	41	2	5	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0004	14	1	7	6	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0005	10	10	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/1	g0006	9	0	0	0	2	6	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0007	9	1	6	0	0	2	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0008	6	5	0	1	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0009	5	0	2	2	0	1	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0010	4	4	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0011	3	0	3	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0012	3	2	1	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0013	3	2	1	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	1/0	g0014	3	0	0	1	0	1	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0015	3	3	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0016	2	2	0	0	0	0	CCDC106	chr19	55643212	55658161