JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC106_chr19_55643212_55658161	0/0	g0017	2	2	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0018	2	2	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0019	2	0	0	0	0	2	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0020	1	0	0	1	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0021	1	0	0	1	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0022	1	0	0	1	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0023	1	0	0	1	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0024	1	1	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0025	1	1	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0026	1	0	1	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0027	1	0	1	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0028	1	1	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0029	1	1	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0030	1	1	0	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0031	1	0	1	0	0	0	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0032	1	0	0	0	0	1	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	g0033	1	0	0	1	0	0	CCDC106	chr19	55643212	55658161
CCDC107_chr9_35653292_35666511	1/0	g0001	276	42	31	171	8	23	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/1	g0002	59	5	26	8	5	14	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0003	25	11	4	7	1	2	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0004	22	14	2	4	0	2	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0005	21	2	8	2	2	7	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0006	12	11	1	0	0	0	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0007	5	4	1	0	0	0	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0008	1	1	0	0	0	0	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0009	1	0	0	1	0	0	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0010	1	1	0	0	0	0	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0011	1	0	0	1	0	0	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0012	1	1	0	0	0	0	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	g0013	1	0	1	0	0	0	CCDC107	chr9	35653292	35666511
CCDC110_chr4_185440182_185476733	0/0	g0001	12	0	5	7	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0002	5	0	1	4	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0003	5	0	1	4	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0004	3	0	0	3	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0005	3	0	0	3	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0006	3	0	0	3	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0007	3	0	0	3	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0008	3	0	0	3	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0009	3	0	0	3	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0010	2	0	0	0	0	2	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0011	2	0	1	0	1	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0012	2	0	0	0	0	2	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0013	2	0	2	0	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0014	2	0	2	0	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0015	2	2	0	0	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0016	2	0	0	2	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0017	2	0	0	2	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0018	2	0	0	2	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0019	2	2	0	0	0	0	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	g0020	2	0	0	2	0	0	CCDC110	chr4	185440182	185476733