JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACTB_chr7_5522148_5535601	0/0	g0056	1	0	0	1	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0057	1	1	0	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0058	1	0	0	0	1	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0059	1	0	0	0	1	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0060	1	0	0	0	1	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0061	1	0	0	0	0	1	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0062	1	0	0	1	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0063	1	0	0	1	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0064	1	1	0	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0065	1	0	0	1	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0066	1	0	0	1	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0067	1	0	1	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0068	1	1	0	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0069	1	1	0	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0070	1	0	1	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0071	1	0	1	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0072	1	1	0	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0073	1	0	0	1	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0074	1	1	0	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0075	1	1	0	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0076	1	0	1	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0077	1	0	0	1	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0078	1	0	1	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0079	1	0	0	1	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0080	1	1	0	0	0	0	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	g0081	1	0	1	0	0	0	ACTB	chr7	5522148	5535601
ACTC1_chr15_34785230_34800549	0/0	g0001	100	0	23	64	3	10	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0002	42	1	8	29	2	2	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	1/1	g0003	37	7	6	21	0	1	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0004	31	6	3	15	3	4	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0005	30	0	6	20	1	3	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0006	23	0	5	15	0	3	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0007	19	2	4	11	0	2	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0008	12	1	1	8	0	2	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0009	8	0	0	6	1	1	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0010	7	1	4	0	1	1	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0011	7	6	1	0	0	0	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0012	6	0	0	4	1	1	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0013	4	0	0	3	0	1	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0014	4	0	0	1	2	1	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0015	4	1	0	3	0	0	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0016	4	0	1	0	0	3	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0017	4	4	0	0	0	0	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0018	4	4	0	0	0	0	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0019	4	1	1	1	0	1	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0020	4	4	0	0	0	0	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0021	4	4	0	0	0	0	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0022	3	2	1	0	0	0	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0023	3	0	1	1	0	1	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	g0024	3	1	0	2	0	0	ACTC1	chr15	34785230	34800549