JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC115_chr2_130332933_130347164	0/0	g0027	1	1	0	0	0	0	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	g0028	1	0	0	0	1	0	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	g0029	1	0	0	0	1	0	CCDC115	chr2	130332933	130347164
CCDC116_chr22_21627760_21642329	1/1	g0001	313	67	61	129	14	40	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0002	35	1	1	26	1	6	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0003	8	5	3	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0004	7	7	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0005	4	4	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0006	3	3	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0007	3	0	3	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0008	3	3	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0009	2	2	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0010	2	0	0	2	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0011	2	1	1	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0012	1	0	0	1	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0013	1	1	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0014	1	0	0	1	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0015	1	0	0	0	1	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0016	1	0	0	1	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0017	1	1	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0018	1	0	0	1	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0019	1	0	1	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0020	1	0	0	1	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0021	1	1	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0022	1	1	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	g0023	1	1	0	0	0	0	CCDC116	chr22	21627760	21642329
CCDC117_chr22_28767695_28794295	0/0	g0001	21	0	4	17	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0002	19	1	6	11	0	1	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0003	17	1	4	7	2	3	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0004	15	0	2	13	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0005	15	0	2	7	2	4	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0006	13	2	3	8	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0007	9	2	0	6	0	1	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0008	9	2	5	2	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0009	8	0	0	0	3	5	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0010	8	0	0	8	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0011	6	6	0	0	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0012	5	0	0	5	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0013	5	0	0	5	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0014	5	0	1	1	0	3	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0015	5	5	0	0	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0016	5	1	1	3	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0017	5	2	2	0	0	1	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0018	5	0	0	5	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0019	5	0	1	3	0	1	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0020	4	1	1	1	0	1	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0021	4	0	0	4	0	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0022	4	1	2	0	0	1	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0023	4	0	3	0	1	0	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	g0024	3	0	0	2	0	1	CCDC117	chr22	28767695	28794295