JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC120_chrX_49053999_49074854	0/0	g0062	1	0	1	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0063	1	0	0	0	0	1	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0064	1	0	1	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0065	1	0	1	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0066	1	1	0	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0067	1	0	1	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0068	1	1	0	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0069	1	1	0	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0070	1	0	0	1	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0071	1	1	0	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0072	1	0	1	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0073	1	0	1	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0074	1	0	0	1	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0075	1	0	1	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0076	1	0	0	1	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0077	1	1	0	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0078	1	1	0	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0079	1	0	0	0	0	1	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0080	1	0	1	0	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0081	1	0	0	0	1	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0082	1	0	0	1	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0083	1	0	0	1	0	0	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	g0084	1	0	0	1	0	0	CCDC120	chrX	49053999	49074854
CCDC121_chr2_27620638_27634012	0/0	g0001	245	39	40	135	9	22	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	1/1	g0002	79	20	19	19	7	12	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0003	11	8	3	0	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0004	7	0	0	7	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0005	7	6	1	0	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0006	6	5	1	0	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0007	6	0	0	6	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0008	5	0	0	5	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0009	4	0	0	4	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0010	3	3	0	0	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0011	2	0	0	0	0	2	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0012	2	0	0	1	0	1	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0013	1	0	1	0	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0014	1	0	1	0	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0015	1	1	0	0	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0016	1	1	0	0	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0017	1	0	0	0	0	1	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0018	1	0	0	1	0	0	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	g0019	1	1	0	0	0	0	CCDC121	chr2	27620638	27634012
CCDC122_chr13_43831352_43884740	0/0	g0001	26	0	6	12	3	5	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	g0002	20	2	3	9	0	6	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	g0003	16	1	3	12	0	0	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	g0004	8	0	0	6	1	1	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	g0005	7	0	3	4	0	0	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	g0006	7	0	0	7	0	0	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	g0007	6	0	2	0	2	2	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	g0008	6	1	0	5	0	0	CCDC122	chr13	43831352	43884740