JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC152_chr5_42751818_42807439	0/0	g0173	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0174	1	0	1	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0175	1	0	0	0	1	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0176	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0177	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0178	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0179	1	0	1	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0180	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0181	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0182	1	0	0	0	0	1	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0183	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0184	1	0	1	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0185	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0186	1	0	1	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0187	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0188	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0189	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0190	1	0	1	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0191	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0192	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0193	1	0	1	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0194	1	0	1	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0195	1	0	1	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0196	1	1	0	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0197	1	1	0	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0198	1	0	1	0	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0199	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0200	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	g0201	1	0	0	1	0	0	CCDC152	chr5	42751818	42807439
CCDC153_chr11_119185254_119200841	0/0	g0001	61	3	10	39	2	7	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0002	47	0	3	29	1	14	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0003	43	5	4	28	1	5	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0004	16	0	7	8	1	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0005	15	2	1	10	0	2	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0006	15	2	2	11	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0007	11	5	4	0	1	1	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0008	10	0	1	5	1	3	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0009	9	2	5	0	2	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0010	9	9	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/1	g0011	8	1	0	4	1	1	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0012	8	0	4	1	2	1	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0013	8	7	1	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0014	6	0	0	6	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0015	5	3	0	0	0	2	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0016	5	0	0	5	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0017	5	5	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0018	4	1	3	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0019	4	0	0	4	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0020	4	0	1	3	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0021	3	0	0	3	0	0	CCDC153	chr11	119185254	119200841