JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC153_chr11_119185254_119200841	0/0	g0072	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0073	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0074	1	0	1	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0075	1	0	0	0	0	1	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0076	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0077	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0078	1	0	1	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0079	1	0	0	0	0	1	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0080	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0081	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0082	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0083	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0084	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0085	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0086	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0087	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0088	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0089	1	0	1	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0090	1	0	1	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0091	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0092	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0093	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0094	1	0	1	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0095	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0096	1	0	1	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0097	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0098	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0099	1	0	0	0	0	1	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0100	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0101	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0102	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0103	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0104	1	0	0	1	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0105	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0106	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0107	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0108	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0109	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	g0110	1	1	0	0	0	0	CCDC153	chr11	119185254	119200841
CCDC154_chr16_1429383_1449556	0/0	g0001	57	2	3	45	1	6	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0002	27	1	10	13	1	2	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/1	g0003	21	4	3	10	0	3	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0004	15	0	13	1	1	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0005	14	0	4	9	0	1	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0006	13	4	0	6	0	3	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0007	7	0	0	5	0	2	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0008	6	6	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0009	6	0	4	0	2	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0010	6	0	1	0	2	3	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0011	5	0	1	3	0	1	CCDC154	chr16	1429383	1449556