JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC154_chr16_1429383_1449556	0/0	g0162	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0163	1	0	0	0	0	1	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0164	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0165	1	0	0	0	0	1	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0166	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0167	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0168	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0169	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0170	1	0	0	1	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0171	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0172	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0173	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0174	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0175	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0176	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0177	1	0	1	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0178	1	0	0	0	1	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0179	1	0	1	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0180	1	0	1	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0181	1	0	1	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0182	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0183	1	0	1	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0184	1	0	1	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0185	1	0	1	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0186	1	1	0	0	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0187	1	0	0	1	0	0	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	g0188	1	0	0	0	0	1	CCDC154	chr16	1429383	1449556
CCDC157_chr22_30352007_30383673	0/0	g0001	36	0	6	23	2	5	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0002	16	3	7	4	2	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0003	14	6	4	4	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0004	10	0	2	7	0	1	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0005	8	2	4	1	1	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/1	g0006	7	0	5	0	0	1	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0007	7	7	0	0	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0008	7	0	1	5	1	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0009	7	0	0	7	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0010	6	5	1	0	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0011	6	0	3	0	0	3	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0012	6	0	2	3	1	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0013	5	5	0	0	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0014	5	0	3	0	2	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0015	5	0	1	3	0	1	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0016	5	0	0	5	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0017	5	0	0	5	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0018	5	0	1	4	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0019	4	4	0	0	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0020	4	4	0	0	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0021	4	4	0	0	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0022	3	0	0	3	0	0	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	g0023	3	0	0	2	0	1	CCDC157	chr22	30352007	30383673