JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC158_chr4_76308039_76426141	0/0	g0329	1	1	0	0	0	0	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	g0330	1	1	0	0	0	0	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	g0331	1	1	0	0	0	0	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	g0332	1	1	0	0	0	0	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	g0333	1	1	0	0	0	0	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	g0334	1	1	0	0	0	0	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	g0335	1	1	0	0	0	0	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	g0336	1	1	0	0	0	0	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	g0337	1	1	0	0	0	0	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	g0338	1	0	0	0	0	1	CCDC158	chr4	76308039	76426141
CCDC159_chr19_11341519_11359944	1/0	g0001	67	29	4	29	2	2	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/1	g0002	66	3	21	33	5	3	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0003	47	4	8	25	3	7	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0004	37	0	5	22	0	10	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0005	12	0	1	11	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0006	10	0	4	0	1	5	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0007	8	8	0	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0008	8	8	0	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0009	7	2	0	5	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0010	6	0	0	5	0	1	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0011	6	0	5	1	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0012	6	0	4	0	0	2	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0013	5	4	1	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0014	5	5	0	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0015	5	1	3	0	1	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0016	5	0	0	5	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0017	4	0	0	4	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0018	3	0	0	3	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0019	3	2	1	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0020	3	1	2	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0021	3	3	0	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0022	2	0	2	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0023	2	0	0	2	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0024	2	0	1	0	1	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0025	2	0	0	0	1	1	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0026	1	0	0	1	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0027	1	0	1	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0028	1	0	1	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0029	1	0	0	0	0	1	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0030	1	0	0	1	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0031	1	0	0	1	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0032	1	0	1	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0033	1	0	0	0	1	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0034	1	0	0	0	0	1	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0035	1	0	1	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0036	1	0	0	0	0	1	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0037	1	1	0	0	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0038	1	0	0	1	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0039	1	0	0	1	0	0	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	g0040	1	1	0	0	0	0	CCDC159	chr19	11341519	11359944