JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC15_chr11_124949202_125046489	0/0	g0282	1	0	0	0	1	0	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	g0283	1	0	0	1	0	0	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	g0284	1	0	1	0	0	0	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	g0285	1	0	1	0	0	0	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	g0286	1	0	1	0	0	0	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	g0287	1	0	0	1	0	0	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	g0288	1	0	1	0	0	0	CCDC15	chr11	124949202	125046489
CCDC160_chrX_134232182_134251842	0/0	g0001	38	0	8	25	1	4	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0002	35	6	3	23	0	3	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0003	18	4	0	10	0	4	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0004	17	1	2	12	1	1	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0005	13	0	11	0	1	1	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0006	11	0	0	11	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0007	8	2	3	0	1	2	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/1	g0008	8	0	0	6	1	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0009	6	5	1	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0010	6	5	0	0	0	1	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0011	6	0	0	3	2	1	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0012	5	3	2	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0013	5	5	0	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0014	4	3	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0015	4	2	0	2	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0016	4	0	1	2	0	1	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	1/0	g0017	4	1	0	1	0	1	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0018	4	0	0	4	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0019	4	0	0	2	0	2	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0020	3	0	0	3	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0021	3	0	0	2	0	1	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0022	3	0	3	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0023	3	0	0	3	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0024	3	0	0	3	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0025	3	0	2	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0026	2	0	1	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0027	2	0	0	2	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0028	2	1	1	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0029	2	2	0	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0030	2	2	0	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0031	2	0	1	0	0	1	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0032	2	0	2	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0033	2	2	0	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0034	2	1	1	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0035	2	0	0	2	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0036	2	0	0	0	0	2	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0037	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0038	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0039	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0040	1	1	0	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0041	1	1	0	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0042	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0043	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842