JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC160_chrX_134232182_134251842	0/0	g0094	1	0	1	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0095	1	1	0	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0096	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0097	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0098	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0099	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0100	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0101	1	1	0	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0102	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0103	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0104	1	0	1	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0105	1	0	1	0	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0106	1	0	0	1	0	0	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	g0107	1	1	0	0	0	0	CCDC160	chrX	134232182	134251842
CCDC163_chr1_45488866_45505073	0/0	g0001	70	14	7	43	0	6	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0002	63	0	11	45	1	6	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0003	32	13	9	0	6	4	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0004	18	0	0	14	0	4	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0005	16	4	8	0	2	2	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0006	14	2	4	4	1	3	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0007	10	10	0	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0008	9	0	8	0	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0009	9	0	0	9	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0010	7	0	2	4	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0011	7	4	1	2	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0012	7	0	4	0	3	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0013	7	0	0	7	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0014	5	4	1	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0015	5	0	0	4	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/1	g0016	5	2	1	0	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0017	4	1	1	2	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0018	4	4	0	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0019	4	0	0	3	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0020	3	2	1	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0021	3	2	1	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0022	2	2	0	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0023	2	2	0	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0024	2	0	0	2	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0025	2	0	0	2	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0026	2	0	0	2	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0027	2	2	0	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0028	2	0	0	2	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0029	2	1	1	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0030	2	0	0	1	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0031	2	1	1	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0032	2	2	0	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0033	2	0	0	0	2	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0034	2	0	1	0	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0035	2	0	0	2	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0036	2	0	0	2	0	0	CCDC163	chr1	45488866	45505073