JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC163_chr1_45488866_45505073	0/0	g0087	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0088	1	0	1	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0089	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0090	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0091	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0092	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0093	1	0	0	0	1	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0094	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0095	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0096	1	0	0	0	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0097	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0098	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0099	1	0	0	0	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0100	1	0	0	0	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0101	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0102	1	0	0	0	1	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	1/0	g0103	1	0	0	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0104	1	0	0	0	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0105	1	1	0	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0106	1	0	0	0	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0107	1	0	1	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0108	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0109	1	1	0	0	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0110	1	0	0	0	0	1	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0111	1	0	0	1	0	0	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	g0112	1	0	0	0	0	1	CCDC163	chr1	45488866	45505073
CCDC166_chr8_143701694_143713109	0/0	g0001	380	72	76	181	16	35	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0002	13	5	2	0	0	6	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0003	9	8	1	0	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0004	6	6	0	0	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0005	3	3	0	0	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0006	3	0	0	3	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0007	2	2	0	0	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0008	1	0	0	1	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0009	1	0	0	0	0	1	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0010	1	1	0	0	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0011	1	0	1	0	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0012	1	1	0	0	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	g0013	1	0	0	1	0	0	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/1	g0014	1	0	0	0	0	0	CCDC166	chr8	143701694	143713109
CCDC167_chr6_37477938_37504893	0/0	g0001	52	3	3	38	1	7	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	g0002	23	1	3	9	2	8	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	g0003	16	0	4	9	1	2	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	g0004	10	0	1	9	0	0	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	g0005	9	0	0	9	0	0	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	g0006	8	0	0	8	0	0	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	g0007	8	0	3	3	1	1	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	g0008	7	0	6	0	0	1	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	g0009	7	0	3	0	2	2	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	g0010	7	0	0	7	0	0	CCDC167	chr6	37477938	37504893