JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC175_chr14_59500067_59581812	0/0	g0256	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0257	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	1/0	g0258	1	0	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0259	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0260	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0261	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0262	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0263	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0264	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0265	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0266	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0267	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0268	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0269	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0270	1	0	0	0	1	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0271	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0272	1	0	0	0	0	1	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0273	1	0	1	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0274	1	0	0	0	0	1	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/1	g0275	1	0	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0276	1	0	0	0	0	1	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	g0277	1	1	0	0	0	0	CCDC175	chr14	59500067	59581812
CCDC177_chr14_69564799_69579871	0/1	g0001	171	37	27	74	11	21	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0002	31	0	2	21	2	6	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0003	18	0	0	16	0	2	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	1/0	g0004	17	13	1	2	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0005	13	2	2	8	0	1	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0006	12	1	0	10	1	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0007	10	0	2	1	0	7	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0008	9	8	1	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0009	5	5	0	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0010	4	2	2	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0011	4	2	2	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0012	3	1	2	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0013	3	0	0	3	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0014	3	0	1	2	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0015	3	0	0	3	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0016	3	2	1	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0017	2	1	1	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0018	2	0	0	1	0	1	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0019	2	0	0	2	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0020	2	0	0	2	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0021	1	1	0	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0022	1	0	0	0	0	1	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0023	1	0	0	1	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0024	1	0	0	1	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0025	1	1	0	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0026	1	1	0	0	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0027	1	0	0	1	0	0	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	g0028	1	0	0	1	0	0	CCDC177	chr14	69564799	69579871