JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC179_chr11_22841922_22865474	0/0	g0280	1	0	0	0	0	1	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	g0281	1	0	0	0	0	1	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	g0282	1	0	0	1	0	0	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	g0283	1	1	0	0	0	0	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	g0284	1	0	1	0	0	0	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	g0285	1	0	0	1	0	0	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	0/0	g0286	1	0	0	0	1	0	CCDC179	chr11	22841922	22865474
CCDC17_chr1_45615044_45629054	0/0	g0001	164	32	29	78	4	21	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	1/0	g0002	128	22	34	55	4	12	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0003	37	0	0	36	1	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/1	g0004	32	13	10	0	3	5	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0005	13	0	0	13	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0006	12	0	2	10	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0007	6	6	0	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0008	3	3	0	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0009	3	0	0	3	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0010	3	2	1	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0011	2	0	0	2	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0012	2	2	0	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0013	2	1	1	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0014	2	2	0	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0015	2	2	0	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0016	2	0	0	2	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0017	2	2	0	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0018	1	0	0	0	0	1	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0019	1	0	0	1	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0020	1	0	0	1	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0021	1	0	1	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0022	1	0	0	1	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0023	1	1	0	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0024	1	0	0	0	0	1	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0025	1	0	0	1	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0026	1	0	0	0	0	1	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0027	1	1	0	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0028	1	0	0	1	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0029	1	0	0	0	0	1	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0030	1	0	1	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0031	1	0	0	0	0	1	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0032	1	0	0	1	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0033	1	0	1	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0034	1	0	0	0	0	1	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0035	1	1	0	0	0	0	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	g0036	1	0	0	1	0	0	CCDC17	chr1	45615044	45629054
CCDC180_chr9_97302659_97383751	0/0	g0001	8	0	1	7	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0002	4	0	0	4	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0003	4	0	0	4	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0004	3	0	0	3	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0005	3	2	1	0	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0006	3	0	1	2	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0007	3	0	3	0	0	0	CCDC180	chr9	97302659	97383751