JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC180_chr9_97302659_97383751	0/0	g0308	1	0	1	0	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0309	1	0	0	0	0	1	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0310	1	0	0	1	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0311	1	0	0	1	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0312	1	0	1	0	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0313	1	0	0	0	1	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0314	1	0	1	0	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0315	1	0	1	0	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0316	1	0	1	0	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0317	1	0	1	0	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0318	1	0	0	1	0	0	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	g0319	1	0	0	0	0	1	CCDC180	chr9	97302659	97383751
CCDC181_chr1_169389870_169432474	0/0	g0001	29	0	3	25	0	1	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0002	26	1	2	19	0	4	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	1/0	g0003	17	2	3	7	0	4	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0004	15	0	2	12	0	1	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0005	12	1	5	6	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0006	11	0	6	1	3	1	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0007	7	5	2	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0008	5	5	0	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0009	5	0	0	1	0	4	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0010	5	5	0	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0011	5	0	4	0	1	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0012	5	0	1	0	2	2	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0013	4	0	0	4	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0014	4	2	1	0	1	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0015	4	0	4	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0016	4	0	1	0	1	2	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0017	4	0	4	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0018	4	0	0	4	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0019	3	0	1	0	2	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0020	3	3	0	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0021	3	0	0	3	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0022	3	0	1	2	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0023	3	3	0	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0024	3	0	1	2	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0025	3	0	2	0	0	1	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0026	3	3	0	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0027	3	3	0	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0028	3	0	3	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0029	3	0	0	3	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0030	3	3	0	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0031	3	0	3	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0032	2	1	1	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0033	2	2	0	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0034	2	0	0	0	0	2	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0035	2	2	0	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0036	2	0	2	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0037	2	0	2	0	0	0	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	g0038	2	0	0	0	0	2	CCDC181	chr1	169389870	169432474