JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC187_chr9_136244973_136309094	0/0	g0365	1	0	1	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0366	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0367	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0368	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0369	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0370	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0371	1	0	1	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0372	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0373	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0374	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0375	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0376	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0377	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0378	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0379	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0380	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0381	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0382	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0383	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0384	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0385	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0386	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0387	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0388	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0389	1	0	0	0	0	1	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0390	1	0	0	1	0	0	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	g0391	1	1	0	0	0	0	CCDC187	chr9	136244973	136309094
CCDC188_chr22_20143416_20156055	0/0	g0001	96	0	17	65	3	11	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	1/0	g0002	85	19	18	35	8	4	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0003	54	9	11	23	4	7	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0004	27	18	1	6	1	1	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0005	21	3	2	16	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/1	g0006	21	0	10	0	2	8	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0007	14	14	0	0	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0008	13	0	1	11	0	1	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0009	5	0	0	5	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0010	5	5	0	0	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0011	5	4	1	0	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0012	4	0	3	0	0	1	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0013	4	0	0	4	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0014	4	3	1	0	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0015	4	0	0	3	0	1	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0016	3	3	0	0	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0017	3	3	0	0	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0018	2	2	0	0	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0019	2	0	0	2	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0020	2	0	0	0	0	2	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0021	2	0	0	2	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0022	2	0	0	2	0	0	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	g0023	2	0	0	2	0	0	CCDC188	chr22	20143416	20156055