JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC192_chr5_127698391_127946507	0/0	g0211	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0212	1	0	0	0	0	1	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0213	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0214	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0215	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0216	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0217	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0218	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0219	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0220	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0221	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0222	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0223	1	0	1	0	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0224	1	0	0	0	0	1	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0225	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0226	1	1	0	0	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0227	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0228	1	0	0	1	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0229	1	0	0	0	0	1	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0230	1	1	0	0	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0231	1	1	0	0	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0232	1	1	0	0	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0233	1	1	0	0	0	0	CCDC192	chr5	127698391	127946507
CCDC192_chr5_127698391_127946507	0/0	g0234	1	1	0	0	0	0	CCDC192	chr5	127698391	127946507
CCDC194_chr19_17382196_17399196	0/1	g0001	116	8	38	49	6	14	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	1/0	g0002	30	2	3	22	1	1	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0003	29	11	5	10	0	3	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0004	18	9	3	1	1	4	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0005	7	1	0	6	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0006	7	0	0	6	1	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0007	7	0	0	7	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0008	7	2	2	3	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0009	6	0	1	0	0	5	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0010	6	6	0	0	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0011	5	2	0	2	0	1	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0012	5	3	1	0	1	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0013	4	0	0	4	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0014	4	0	0	4	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0015	4	0	2	2	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0016	4	1	1	1	1	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0017	3	0	0	3	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0018	3	0	0	3	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0019	3	2	0	1	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0020	3	1	0	2	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0021	3	3	0	0	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0022	3	0	3	0	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0023	3	3	0	0	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0024	3	0	0	2	0	1	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0025	3	0	0	3	0	0	CCDC194	chr19	17382196	17399196
CCDC194_chr19_17382196_17399196	0/0	g0026	3	3	0	0	0	0	CCDC194	chr19	17382196	17399196