JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC200_chr17_43216420_43233623	0/0	g0211	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0212	1	0	0	1	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0213	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0214	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0215	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0216	1	0	0	0	0	1	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0217	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0218	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0219	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0220	1	0	0	0	0	1	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0221	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0222	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0223	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0224	1	0	0	0	0	1	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0225	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0226	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0227	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0228	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0229	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0230	1	0	0	1	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0231	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0232	1	0	0	0	0	1	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0233	1	0	0	0	0	1	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0234	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0235	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0236	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0237	1	0	0	1	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0238	1	0	0	1	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0239	1	0	0	1	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0240	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0241	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0242	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0243	1	0	0	1	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0244	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0245	1	0	1	0	0	0	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	g0246	1	1	0	0	0	0	CCDC200	chr17	43216420	43233623
CCDC201_chr7_45854994_45878082	0/0	g0001	58	9	12	31	2	4	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0002	46	1	12	26	4	3	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	1/0	g0003	40	1	10	15	2	11	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0004	31	0	5	25	0	1	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0005	27	10	2	9	0	6	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0006	20	2	4	14	0	0	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0007	11	0	8	0	0	3	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0008	11	0	0	11	0	0	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0009	10	10	0	0	0	0	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0010	9	0	6	0	2	1	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0011	7	0	0	7	0	0	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0012	6	0	4	0	1	1	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/1	g0013	6	1	1	0	3	0	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	g0014	6	0	0	6	0	0	CCDC201	chr7	45854994	45878082