JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACTL8_chr1_17750333_17832063	0/0	g0344	1	0	0	1	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0345	1	0	0	1	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0346	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0347	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0348	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0349	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0350	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0351	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0352	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0353	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0354	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0355	1	0	1	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0356	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0357	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0358	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0359	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0360	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0361	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	g0362	1	1	0	0	0	0	ACTL8	chr1	17750333	17832063
ACTL9_chr19_8692400_8703795	1/1	g0000	356	84	72	136	16	46	ACTL9	chr19	8692400	8703795
ACTMAP_chr19_40735861_40755477	0/0	g0001	51	5	12	25	2	7	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	1/0	g0002	48	5	15	21	3	3	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0003	36	2	1	32	0	1	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0004	27	0	5	13	4	5	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0005	13	9	3	0	1	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0006	9	0	6	1	0	2	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0007	9	9	0	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0008	8	0	0	6	0	2	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0009	8	5	3	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0010	7	0	3	3	0	1	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0011	7	0	0	7	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0012	7	0	0	7	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0013	6	0	0	5	0	1	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0014	4	4	0	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0015	4	0	0	4	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0016	4	3	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0017	3	2	1	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0018	3	0	1	2	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0019	3	0	3	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0020	3	0	2	0	1	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0021	3	0	2	0	1	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0022	3	0	0	3	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0023	3	3	0	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/1	g0024	3	0	2	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0025	3	0	0	1	0	2	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0026	3	0	0	3	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0027	2	0	0	2	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0028	2	0	0	2	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0029	2	0	0	0	2	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0030	2	0	0	2	0	0	ACTMAP	chr19	40735861	40755477