JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC28A_chr6_138768769_138798319	0/0	g0153	1	0	0	0	0	1	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0154	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0155	1	1	0	0	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0156	1	1	0	0	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0157	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0158	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0159	1	0	0	0	0	1	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0160	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0161	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0162	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0163	1	0	0	0	0	1	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0164	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0165	1	0	0	0	0	1	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0166	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0167	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0168	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0169	1	0	0	0	1	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0170	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0171	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0172	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0173	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0174	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0175	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0176	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0177	1	0	0	0	0	1	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0178	1	0	0	0	0	1	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0179	1	0	0	0	0	1	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0180	1	1	0	0	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0181	1	0	0	1	0	0	CCDC28A	chr6	138768769	138798319
CCDC28A_chr6_138768769_138798319	0/0	g0182	1	1	0	0	0	0	CCDC28A	chr6	138768769	138798319
CCDC28B_chr1_32195595_32210387	1/1	g0001	283	53	55	135	11	27	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0002	53	0	8	31	2	12	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0003	12	11	1	0	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0004	7	6	1	0	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0005	7	7	0	0	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0006	6	0	0	5	0	1	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0007	4	0	0	4	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0008	3	3	0	0	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0009	3	0	0	3	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0010	3	0	0	3	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0011	3	1	1	0	1	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0012	3	3	0	0	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0013	2	1	1	0	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0014	2	2	0	0	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0015	2	0	0	2	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0016	2	0	2	0	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0017	1	0	0	1	0	0	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0018	1	0	0	0	0	1	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0019	1	0	0	0	0	1	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	g0020	1	0	0	1	0	0	CCDC28B	chr1	32195595	32210387