JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACTMAP_chr19_40735861_40755477	0/0	g0131	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0132	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0133	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0134	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0135	1	1	0	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0136	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0137	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0138	1	0	0	0	0	1	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0139	1	0	0	0	0	1	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0140	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0141	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0142	1	0	0	0	0	1	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0143	1	1	0	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0144	1	1	0	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0145	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0146	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0147	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0148	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0149	1	1	0	0	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0150	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	g0151	1	0	0	1	0	0	ACTMAP	chr19	40735861	40755477
ACTN1_chr14_68869128_68984302	0/0	g0001	2	2	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0002	2	0	0	2	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0003	1	0	0	0	1	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0004	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0005	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0006	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0007	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0008	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0009	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0010	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0011	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0012	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0013	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0014	1	0	1	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0015	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0016	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0017	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0018	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0019	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0020	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0021	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0022	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0023	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0024	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0025	1	1	0	0	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0026	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0027	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0028	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	g0029	1	0	0	1	0	0	ACTN1	chr14	68869128	68984302