JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC40_chr17_80031642_80105613	0/0	g0347	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0348	1	1	0	0	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0349	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0350	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0351	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0352	1	0	0	0	0	1	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0353	1	1	0	0	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0354	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0355	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0356	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0357	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0358	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0359	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0360	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0361	1	0	0	0	0	1	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0362	1	1	0	0	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0363	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0364	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0365	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0366	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0367	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0368	1	0	0	0	0	1	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0369	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0370	1	0	1	0	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0371	1	0	1	0	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0372	1	0	0	0	0	1	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0373	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0374	1	0	1	0	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0375	1	1	0	0	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0376	1	0	0	0	0	1	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0377	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	g0378	1	0	0	1	0	0	CCDC40	chr17	80031642	80105613
CCDC42_chr17_8724935_8749836	0/0	g0001	26	5	4	12	4	1	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	1/0	g0002	25	4	3	15	0	2	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0003	19	4	6	4	1	4	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0004	18	0	4	13	0	1	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0005	13	0	2	7	0	4	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0006	11	1	6	4	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0007	11	2	3	5	0	1	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0008	11	0	5	3	2	1	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0009	11	0	7	3	0	1	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0010	10	0	4	4	1	1	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0011	10	9	1	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0012	7	7	0	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0013	6	0	3	0	0	3	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0014	5	0	0	5	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0015	4	4	0	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0016	4	4	0	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0017	4	0	0	4	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0018	4	0	0	4	0	0	CCDC42	chr17	8724935	8749836