JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC42_chr17_8724935_8749836	0/0	g0169	1	0	1	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0170	1	1	0	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0171	1	0	0	0	0	1	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0172	1	0	0	1	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0173	1	0	1	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0174	1	0	0	1	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0175	1	0	1	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0176	1	0	0	1	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0177	1	0	1	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0178	1	0	1	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0179	1	1	0	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0180	1	1	0	0	0	0	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0181	1	0	0	0	0	1	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	g0182	1	1	0	0	0	0	CCDC42	chr17	8724935	8749836
CCDC43_chr17_44672440_44694776	0/0	g0001	84	3	25	42	5	9	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0002	40	26	3	10	1	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0003	38	5	4	22	1	6	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0004	32	6	6	11	2	7	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/1	g0005	28	3	13	6	3	2	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0006	14	4	4	6	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0007	12	0	0	12	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0008	9	8	1	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0009	8	8	0	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	1/0	g0010	7	4	0	1	1	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0011	5	0	0	5	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0012	4	0	2	2	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0013	4	0	0	4	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0014	3	0	3	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0015	3	3	0	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0016	3	2	1	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0017	2	0	2	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0018	2	0	0	2	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0019	2	0	1	0	1	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0020	2	1	1	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0021	2	0	0	0	0	2	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0022	2	2	0	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0023	2	0	0	2	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0024	2	0	0	2	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0025	2	0	2	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0026	1	1	0	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0027	1	1	0	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0028	1	0	0	1	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0029	1	0	0	1	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0030	1	0	0	1	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0031	1	0	0	1	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0032	1	0	1	0	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0033	1	0	0	1	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0034	1	0	0	1	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0035	1	0	0	1	0	0	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	g0036	1	0	0	1	0	0	CCDC43	chr17	44672440	44694776