JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC47_chr17_63740255_63778597	0/0	g0312	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0313	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0314	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0315	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0316	1	0	1	0	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0317	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0318	1	0	0	0	0	1	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0319	1	0	0	0	1	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0320	1	0	1	0	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0321	1	0	1	0	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0322	1	0	0	0	0	1	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0323	1	0	0	0	1	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0324	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0325	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0326	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0327	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0328	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0329	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0330	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0331	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0332	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0333	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0334	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0335	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0336	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0337	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0338	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0339	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0340	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0341	1	0	1	0	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0342	1	0	0	1	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0343	1	1	0	0	0	0	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	g0344	1	1	0	0	0	0	CCDC47	chr17	63740255	63778597
CCDC50_chr3_191324394_191403659	0/0	g0001	11	0	0	11	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0002	7	0	0	5	0	2	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0003	6	0	3	0	1	2	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0004	5	0	1	4	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0005	5	5	0	0	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0006	4	0	0	4	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0007	4	0	0	4	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0008	4	0	0	4	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0009	3	0	3	0	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0010	3	0	0	3	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0011	3	0	0	3	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0012	3	0	3	0	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0013	3	0	2	0	1	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0014	3	0	0	3	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0015	3	0	1	0	1	1	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0016	2	2	0	0	0	0	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	g0017	2	0	2	0	0	0	CCDC50	chr3	191324394	191403659