JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC57_chr17_82096470_82217842	0/0	g0232	1	0	0	0	0	1	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0233	1	0	0	0	0	1	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0234	1	1	0	0	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0235	1	1	0	0	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0236	1	0	0	0	0	1	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0237	1	0	1	0	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0238	1	0	0	1	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0239	1	0	0	1	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0240	1	0	0	1	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0241	1	0	0	1	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0242	1	0	0	0	0	1	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0243	1	0	1	0	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0244	1	0	1	0	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	1/0	g0245	1	0	0	0	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0246	1	0	1	0	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0247	1	0	0	1	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0248	1	0	0	0	0	1	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0249	1	1	0	0	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0250	1	0	0	1	0	0	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	g0251	1	0	1	0	0	0	CCDC57	chr17	82096470	82217842
CCDC59_chr12_82347303_82363387	0/0	g0001	196	47	40	79	11	19	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0002	22	2	0	19	0	1	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0003	22	0	0	22	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0004	10	1	2	1	2	4	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0005	7	0	0	7	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0006	7	7	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0007	6	0	6	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0008	6	0	2	0	0	4	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0009	5	1	2	0	2	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0010	4	0	0	0	1	3	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0011	4	4	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0012	4	4	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0013	4	4	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0014	3	0	3	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0015	3	0	0	3	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0016	3	3	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/1	g0017	2	0	0	0	1	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0018	2	0	0	2	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0019	2	0	1	0	1	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0020	2	1	1	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0021	2	2	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0022	1	1	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0023	1	0	0	1	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0024	1	1	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0025	1	0	0	0	0	1	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0026	1	0	0	1	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0027	1	1	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0028	1	0	1	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0029	1	1	0	0	0	0	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	g0030	1	1	0	0	0	0	CCDC59	chr12	82347303	82363387