JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC6_chr10_59783747_59911556	0/0	g0273	1	0	0	1	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0274	1	0	0	1	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0275	1	0	0	1	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0276	1	0	0	1	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0277	1	0	1	0	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0278	1	0	1	0	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0279	1	1	0	0	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0280	1	0	1	0	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0281	1	0	1	0	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0282	1	0	1	0	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0283	1	1	0	0	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0284	1	1	0	0	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0285	1	1	0	0	0	0	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	g0286	1	1	0	0	0	0	CCDC6	chr10	59783747	59911556
CCDC70_chr13_51856969_51871232	0/1	g0001	98	10	15	56	6	10	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0002	97	13	20	53	1	10	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0003	28	3	9	7	5	4	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0004	24	0	2	21	0	1	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0005	24	3	6	12	2	1	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0006	24	6	7	3	2	6	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0007	16	5	5	3	1	2	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0008	16	0	0	16	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0009	11	4	2	2	1	2	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0010	9	4	2	2	0	1	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0011	5	2	2	0	0	1	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0012	4	1	0	3	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	1/0	g0013	4	0	1	0	0	2	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0014	4	3	0	0	0	1	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0015	4	3	1	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0016	3	2	1	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0017	3	3	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0018	3	0	0	3	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0019	3	3	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0020	2	2	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0021	2	0	2	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0022	2	0	0	2	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0023	2	0	0	2	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0024	2	1	0	0	0	1	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0025	2	2	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0026	2	2	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0027	2	2	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0028	2	2	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0029	1	0	0	1	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0030	1	0	0	0	0	1	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0031	1	0	0	1	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0032	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0033	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0034	1	0	0	1	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0035	1	0	1	0	0	0	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	g0036	1	1	0	0	0	0	CCDC70	chr13	51856969	51871232