JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC73_chr11_32597721_32799662	0/0	g0308	1	0	1	0	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0309	1	0	1	0	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0310	1	0	0	1	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0311	1	0	0	1	0	0	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	g0312	1	0	0	1	0	0	CCDC73	chr11	32597721	32799662
CCDC74A_chr2_131522888_131538666	0/0	g0001	63	1	12	41	3	6	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0002	38	11	7	13	0	7	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/1	g0003	38	6	6	14	3	8	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0004	22	0	4	11	3	4	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0005	17	0	5	11	0	1	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0006	11	0	5	6	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0007	10	0	4	6	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0008	10	0	0	8	0	2	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0009	10	0	0	10	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0010	7	0	0	7	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0011	6	0	0	6	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0012	5	1	3	0	0	1	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0013	5	3	2	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0014	5	5	0	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0015	5	5	0	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0016	4	3	0	0	0	1	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0017	4	4	0	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0018	4	0	0	4	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0019	4	0	0	4	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0020	4	0	1	3	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0021	3	0	0	3	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0022	3	0	1	0	2	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0023	3	3	0	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0024	3	1	0	2	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0025	3	0	1	0	0	2	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0026	3	0	2	1	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0027	3	0	0	2	1	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0028	3	0	0	1	0	2	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0029	3	0	0	3	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0030	3	0	0	1	0	2	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0031	3	0	0	2	1	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0032	3	3	0	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0033	2	2	0	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0034	2	1	1	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0035	2	0	2	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0036	2	2	0	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0037	2	1	1	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0038	2	1	0	1	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0039	2	0	2	0	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0040	2	0	0	2	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	1/0	g0041	2	0	0	1	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0042	2	0	1	0	1	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0043	2	0	0	0	0	2	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0044	2	0	0	2	0	0	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	g0045	2	0	0	2	0	0	CCDC74A	chr2	131522888	131538666