JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC77_chr12_396644_447642	0/0	g0407	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0408	1	0	1	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0409	1	0	0	0	0	1	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0410	1	0	1	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0411	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0412	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0413	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0414	1	0	1	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0415	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0416	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0417	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0418	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0419	1	0	1	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0420	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0421	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	g0422	1	1	0	0	0	0	CCDC77	chr12	396644	447642
CCDC78_chr16_717582_731443	0/0	g0001	139	12	33	71	2	21	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	1/0	g0002	72	11	23	29	5	3	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/1	g0003	20	7	5	0	2	5	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0004	17	16	1	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0005	9	1	2	3	0	3	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0006	8	8	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0007	7	0	0	6	0	1	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0008	7	1	0	5	0	1	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0009	7	0	0	7	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0010	6	0	0	6	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0011	6	6	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0012	6	0	3	0	1	2	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0013	5	0	3	0	2	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0014	4	0	0	4	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0015	4	0	0	4	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0016	4	0	0	2	0	2	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0017	4	3	1	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0018	4	0	0	4	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0019	3	3	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0020	3	3	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0021	2	0	0	2	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0022	2	0	0	0	0	2	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0023	2	2	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0024	2	2	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0025	2	0	0	0	0	2	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0026	2	2	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0027	2	1	1	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0028	2	0	0	0	0	2	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0029	2	0	0	0	0	2	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0030	2	1	1	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0031	2	2	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0032	1	1	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0033	1	1	0	0	0	0	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	g0034	1	0	0	1	0	0	CCDC78	chr16	717582	731443