JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC97_chr19_41305172_41329873	0/0	g0101	1	0	0	1	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0102	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0103	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0104	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0105	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0106	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0107	1	0	0	1	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0108	1	0	0	0	0	1	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0109	1	0	1	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0110	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0111	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0112	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0113	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0114	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0115	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0116	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0117	1	0	0	1	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0118	1	0	0	1	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0119	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0120	1	0	1	0	0	0	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	g0121	1	1	0	0	0	0	CCDC97	chr19	41305172	41329873
CCDC9B_chr15_40326452_40345939	0/0	g0001	79	0	13	58	1	7	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0002	37	7	13	5	3	9	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0003	24	1	6	14	1	2	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0004	23	3	3	10	0	7	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0005	14	2	4	5	2	1	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0006	13	0	1	11	0	1	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0007	13	0	0	13	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0008	12	0	1	11	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0009	11	11	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0010	10	0	3	0	3	4	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0011	8	0	0	6	0	2	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0012	8	8	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0013	8	8	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0014	7	1	3	0	2	1	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0015	6	5	1	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/1	g0016	5	0	2	0	1	1	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0017	4	0	0	3	1	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0018	4	0	1	0	1	2	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0019	4	4	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0020	4	3	0	0	1	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0021	4	0	1	3	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	1/0	g0022	3	1	1	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0023	3	0	0	3	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0024	3	2	1	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0025	3	2	1	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0026	3	0	1	0	0	2	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0027	2	0	0	2	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0028	2	0	0	2	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0029	2	2	0	0	0	0	CCDC9B	chr15	40326452	40345939