JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC9B_chr15_40326452_40345939	0/0	g0080	1	0	1	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0081	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0082	1	0	1	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0083	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0084	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0085	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0086	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0087	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0088	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0089	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0090	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0091	1	0	0	1	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0092	1	0	1	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0093	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0094	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0095	1	0	0	0	0	1	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0096	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0097	1	0	1	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0098	1	0	0	0	0	1	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0099	1	0	0	1	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0100	1	0	0	1	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0101	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0102	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0103	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0104	1	0	0	1	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0105	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0106	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0107	1	0	0	0	0	1	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0108	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0109	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0110	1	0	0	0	0	1	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0111	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0112	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0113	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0114	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0115	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0116	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0117	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0118	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0119	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0120	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0121	1	0	0	0	0	1	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0122	1	0	0	1	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0123	1	0	1	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0124	1	0	0	0	1	0	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	g0125	1	1	0	0	0	0	CCDC9B	chr15	40326452	40345939
CCDC9_chr19_47251525_47276953	0/1	g0001	22	5	1	12	2	1	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	1/0	g0002	22	0	5	14	2	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0003	20	0	3	15	0	2	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0004	19	2	6	3	3	5	CCDC9	chr19	47251525	47276953