JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCDC9_chr19_47251525_47276953	0/0	g0205	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0206	1	1	0	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0207	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0208	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0209	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0210	1	1	0	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0211	1	1	0	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0212	1	1	0	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0213	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0214	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0215	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0216	1	1	0	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0217	1	1	0	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0218	1	1	0	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0219	1	1	0	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0220	1	0	1	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0221	1	0	1	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0222	1	0	1	0	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0223	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0224	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	g0225	1	0	0	1	0	0	CCDC9	chr19	47251525	47276953
CCER1_chr12_90947215_90960176	1/1	g0000	406	98	68	188	10	40	CCER1	chr12	90947215	90960176
CCER2_chr19_38903980_38917186	0/0	g0001	139	19	30	76	3	11	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0002	88	6	12	56	4	10	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/1	g0003	78	8	16	41	2	10	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	1/0	g0004	41	8	11	5	8	8	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0005	19	19	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0006	9	9	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0007	5	1	2	0	1	1	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0008	5	5	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0009	4	0	0	4	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0010	4	0	0	3	0	1	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0011	3	3	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0012	3	0	0	3	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0013	3	2	1	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0014	3	0	0	3	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0015	2	0	0	2	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0016	2	0	0	2	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0017	2	0	2	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0018	2	2	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0019	2	0	0	0	0	2	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0020	2	0	0	2	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0021	2	2	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0022	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0023	1	0	1	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0024	1	0	0	1	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0025	1	0	0	0	0	1	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0026	1	0	0	1	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0027	1	0	0	1	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0028	1	0	0	1	0	0	CCER2	chr19	38903980	38917186