JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCER2_chr19_38903980_38917186	0/0	g0029	1	0	1	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0030	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0031	1	0	0	1	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0032	1	0	0	1	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0033	1	0	0	1	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0034	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0035	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0036	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0037	1	0	0	0	0	1	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0038	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0039	1	0	0	1	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0040	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0041	1	0	1	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0042	1	0	1	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0043	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0044	1	0	1	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0045	1	0	1	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0046	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0047	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0048	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0049	1	0	0	0	0	1	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0050	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0051	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0052	1	1	0	0	0	0	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	g0053	1	0	0	1	0	0	CCER2	chr19	38903980	38917186
CCHCR1_chr6_31137439_31162802	0/0	g0001	22	0	2	16	0	4	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0002	21	1	7	9	2	2	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0003	20	0	0	15	0	5	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0004	17	5	4	5	1	2	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0005	15	1	5	8	0	1	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0006	15	7	5	0	3	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0007	14	0	0	14	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0008	13	0	0	13	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0009	9	0	3	3	3	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0010	9	8	1	0	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0011	7	0	0	7	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0012	7	0	1	6	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0013	7	6	1	0	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0014	7	2	3	0	2	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0015	7	7	0	0	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0016	6	5	1	0	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0017	6	1	5	0	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0018	6	0	0	3	1	2	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0019	6	0	0	6	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0020	6	0	2	0	1	3	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0021	5	0	3	0	1	1	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0022	5	0	0	0	0	5	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/1	g0023	5	0	0	2	0	2	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0024	5	3	2	0	0	0	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	g0025	4	1	1	0	0	2	CCHCR1	chr6	31137439	31162802