JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCHCR1_chr6_31137439_31162802	0/0	g0176	1	0	0	1	0	0	CCHCR1	chr6	31137439	31162802
CCIN_chr9_36164388_36176334	1/1	g0000	426	94	72	196	16	46	CCIN	chr9	36164388	36176334
CCKAR_chr4_26476396_26495484	1/1	g0001	114	20	32	47	4	9	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0002	29	0	1	25	0	3	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0003	23	3	4	4	1	11	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0004	21	4	9	4	2	2	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0005	18	2	5	1	3	7	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0006	14	5	2	7	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0007	14	0	0	14	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0008	11	0	0	11	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0009	9	0	0	9	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0010	8	0	0	8	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0011	6	1	0	5	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0012	6	5	1	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0013	5	0	0	5	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0014	5	0	0	5	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0015	5	0	0	5	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0016	5	0	0	4	0	1	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0017	4	4	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0018	4	4	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0019	4	0	1	0	1	2	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0020	4	0	0	0	3	1	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0021	4	0	4	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0022	4	0	0	4	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0023	4	0	0	4	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0024	3	0	0	3	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0025	3	0	0	3	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0026	3	2	0	0	0	1	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0027	3	0	0	3	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0028	3	3	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0029	2	0	0	2	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0030	2	0	0	2	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0031	2	2	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0032	2	0	0	2	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0033	2	0	0	2	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0034	2	2	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0035	2	2	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0036	2	0	2	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0037	2	1	1	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0038	2	2	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0039	2	0	0	2	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0040	2	0	0	2	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0041	2	0	0	2	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0042	2	0	2	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0043	2	2	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0044	2	0	0	2	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0045	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0046	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0047	1	0	1	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0048	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484