JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCKAR_chr4_26476396_26495484	0/0	g0099	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0100	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0101	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0102	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0103	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0104	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0105	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0106	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0107	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0108	1	0	0	0	0	1	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0109	1	0	0	0	0	1	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0110	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0111	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0112	1	0	0	0	0	1	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0113	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0114	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0115	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0116	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0117	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0118	1	0	1	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0119	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0120	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0121	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0122	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0123	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0124	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0125	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0126	1	0	1	0	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0127	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0128	1	0	0	0	0	1	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0129	1	0	0	1	0	0	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	g0130	1	1	0	0	0	0	CCKAR	chr4	26476396	26495484
CCKBR_chr11_6254838_6277127	0/0	g0001	8	0	0	7	0	1	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0002	7	0	1	6	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0003	6	0	0	4	1	1	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0004	6	0	0	5	0	1	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0005	6	0	0	6	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0006	5	0	2	1	1	1	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0007	5	1	2	2	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0008	5	1	1	0	0	3	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0009	5	0	0	5	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0010	5	0	0	5	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0011	4	0	4	0	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0012	4	2	1	1	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0013	4	2	1	1	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0014	4	2	2	0	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0015	3	0	1	0	2	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0016	3	0	0	3	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0017	3	0	0	3	0	0	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	g0018	3	0	3	0	0	0	CCKBR	chr11	6254838	6277127