JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCK_chr3_42252826_42271185	0/0	g0111	1	1	0	0	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0112	1	0	0	1	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0113	1	0	1	0	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0114	1	1	0	0	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0115	1	0	0	0	0	1	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0116	1	0	1	0	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0117	1	1	0	0	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0118	1	0	0	1	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0119	1	1	0	0	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0120	1	0	0	1	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0121	1	0	0	1	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0122	1	0	0	1	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0123	1	0	1	0	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0124	1	0	0	1	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0125	1	1	0	0	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0126	1	0	0	1	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0127	1	1	0	0	0	0	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	g0128	1	1	0	0	0	0	CCK	chr3	42252826	42271185
CCL11_chr17_34280742_34293334	1/1	g0001	179	46	35	71	7	18	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0002	135	15	16	94	1	9	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0003	63	6	18	30	4	5	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0004	29	14	9	0	3	3	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0005	29	0	1	18	1	9	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0006	3	2	1	0	0	0	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0007	2	2	0	0	0	0	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0008	1	1	0	0	0	0	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0009	1	0	0	1	0	0	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0010	1	1	0	0	0	0	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0011	1	1	0	0	0	0	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0012	1	1	0	0	0	0	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0013	1	1	0	0	0	0	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0014	1	0	0	1	0	0	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	g0015	1	0	0	1	0	0	CCL11	chr17	34280742	34293334
CCL13_chr17_34351480_34363610	0/0	g0001	214	23	43	114	9	25	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	g0002	184	33	26	97	5	23	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	1/1	g0003	35	23	7	3	0	0	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	g0004	10	9	1	0	0	0	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	g0005	1	0	1	0	0	0	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	g0006	1	1	0	0	0	0	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	g0007	1	1	0	0	0	0	CCL13	chr17	34351480	34363610
CCL14_chr17_35978288_35991729	0/1	g0001	204	36	50	75	13	29	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0002	92	21	3	58	0	10	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0003	56	0	14	40	1	1	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0004	27	4	4	12	1	6	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0005	19	15	2	0	1	1	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0006	9	9	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0007	7	0	3	4	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0008	6	0	0	6	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0009	4	2	2	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0010	3	0	0	3	0	0	CCL14	chr17	35978288	35991729