JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCL14_chr17_35978288_35991729	0/0	g0011	2	0	0	2	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0012	2	2	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0013	1	0	1	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0014	1	0	0	1	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0015	1	1	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0016	1	1	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0017	1	1	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0018	1	0	0	1	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0019	1	1	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0020	1	1	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0021	1	1	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0022	1	1	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0023	1	0	0	0	0	1	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0024	1	0	1	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0025	1	1	0	0	0	0	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	g0026	1	1	0	0	0	0	CCL14	chr17	35978288	35991729
CCL15_chr17_35992582_36006553	0/0	g0001	94	6	28	48	6	6	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0002	56	2	15	23	7	9	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0003	55	2	5	40	0	8	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0004	29	10	3	14	1	1	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0005	19	0	4	9	1	5	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0006	11	11	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0007	10	0	1	8	0	1	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0008	10	8	0	2	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0009	9	1	0	8	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0010	9	9	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0011	8	0	4	0	1	3	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0012	8	1	6	1	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0013	6	0	0	5	0	1	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0014	6	0	2	4	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0015	4	0	2	2	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0016	4	4	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0017	4	0	0	4	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0018	4	2	0	2	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0019	3	3	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0020	3	0	0	3	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0021	3	1	2	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0022	3	0	0	3	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0023	3	3	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0024	2	0	0	0	0	2	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0025	2	2	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0026	2	0	0	2	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0027	2	0	2	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0028	2	2	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0029	2	2	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0030	2	2	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0031	2	2	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0032	2	2	0	0	0	0	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0033	2	0	0	1	0	1	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	g0034	2	2	0	0	0	0	CCL15	chr17	35992582	36006553